Prov-GigaPath
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Prov GigaPath
Overview :
Prov-GigaPath is a whole-slide foundation model for digital pathology research. Trained on real-world data, it aims to support AI researchers in their studies of pathology foundational models and digital pathology slide data encoding. Developed by multiple authors and published in Nature, it is not suitable for clinical care or any clinical decision-making purposes and is restricted to research use only.
Target Users :
Target audience includes AI researchers and scholars in the field of digital pathology who need a powerful model to analyze and understand large amounts of pathology data, driving advancements in medical research and diagnostic technologies.
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Use Cases
Researchers utilize the Prov-GigaPath model to analyze pathology data, resulting in a publication in Nature journal.
Medical schools leverage the model for teaching and research, enhancing student comprehension of digital pathology.
Hospital researchers employ the model for automated analysis of pathology slides, accelerating research progress.
Features
Supported to run on NVIDIA A100 Tensor Core GPU machines.
Provides download of pre-trained models and code.
Accessible to Prov-GigaPath model on HuggingFace Hub.
Includes tile encoder and slide encoder, respectively extracting local patterns and outputting slide-level representations.
Offers detailed demo notebooks demonstrating how to run the pre-trained model.
Provides pre-extracted embeddings for PCam and PANDA datasets, facilitating fine-tuning experiments.
Provides sample data download links for further research and analysis.
How to Use
Download and install the required CUDA toolkit and Python environment.
Download the Prov-GigaPath model and code from the GitHub repository.
Visit HuggingFace Hub and agree to the terms of service to gain model access.
Set environment variables according to the provided instructions to avoid access errors.
Run the provided demo notebook to familiarize yourself with the model's basic functionalities.
Utilize the tile encoder and slide encoder for data extraction and encoding.
Fine-tune the model as needed to suit specific research objectives.
Download and utilize the provided sample data for further analysis and research.
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